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Program outline

Monday, March 18th Tuesday, March 19th Wednesday, March 20th Post-IB Meeting


Monday, March 18th, 2013

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10:15 Bus Shuttle to Gatersleben (pick-up information)
11:00 - 12:00 Registration
12:00 - 12:15 Welcome Address
Session 1
12:15 - 13:00 Keynote
Carole Goble (University of Manchester, United Kingdom)
"The SysMO-SEEK: A Tale of Systems Biologists, Sharing and Stealth, and Why every platform builder needs PALs"
13:00 - 14:00 Lunch
14:00 - 14:30 Industry Track
Köbi Ehrensberger (AAC Infotray, Switzerland)
"How much LIMS a researcher can bear?"
14:30 - 15:00 Jennifer Hallinan (Newcastle University, United Kingdom)
"BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology"
15:00 - 15:30 Cassidy Kelly (San Francisco State University, United States)
"A System for Extracting Study Design Parameters from Nutritional Genomics Abstracts"
15:30 - 16:00 Keynote
Maria Samsonova (St. Petersburg State Polytechnical University, Russia)
"microRNA determines the early stage dynamics of the regulation network"
16:00 - 16:30 Coffee/Tea Break
16:30 - 18:00 Software Demos
18:00 - 19:30 Dinner: Casino IPK
19:30 - 21:00 Posters with "Beer, Wine and Cheese"
21:15 Bus Shuttle to Quedlinburg

Tuesday, March 19th, 2013

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08:15 Bus Shuttle to Gatersleben (pick-up information)
Session 2
09:00 - 09:45 Keynote
Paul Kersey (EMBL-European Bioinformatics Institute, United Kingdom)
"5000 bacteria, 18 mosquitoes and half a grain"
09:45 - 10:15 Sohei Ito (The University of Tokyo, Japan)
"Modular analysis of gene networks by linear temporal logic"
10:15 - 10:45 Jens Allmer (Izmir Institute of Technology, Turkey)
"Can MiRBase Provide Positive Data for Machine Learning for the Detection of MiRNA Hairpins?"
10:45 - 11:15 Coffee/Tea Break
Session 3
11:15 - 11:45 Lei Shi (Heidelberg Institute For Theoretical Studies (HITS), Germany)
"Excemplify: A Flexible Template Based Solution, Parsing and Managing Data in Spreadsheets for Experimentalists"
11:45 - 12:15 Jose Carlos Nacher (Toho University, Japan)
"Community structure of non-coding RNA interacting network"
12:15 - 12:45 Anne-Christin Hauschild (Max Planck Institute for Informatics, Germany)
"An integrative clinical database and diagnostics platform for biomarker analysis in ion mobility spectra of human exhaled air"
12:45 - 13:45 Lunch
Session 4
13:45 - 14:30 Keynote
Michael Hucka (California Institute of Technology, United States)
"A summary of SBML and other COMBINE standardization and integration activities"
14:30 - 15:00 Lili Liu (ZheJiang University, China)
"An Integrative Bioinformatics Framework for Genome-scale Multiple Level Network Reconstruction of Rice"
15:00 - 15:30 Hendrik Mehlhorn (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
"TransID — the Flexible Identifier Mapping Service"
15:45 Bus Shuttle to Quedlinburg
16:30 - 18:00 Social Event: City Tour Quedlinburg (UNESCO World Heritage)
Meeting Point: Market Place
18:30  Conference Dinner: Brauhaus Lüdde

Wednesday, March 20th, 2013

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08:15 Bus Shuttle to Gatersleben (pick-up information)
Session 5
09:00 - 09:45 Keynote
Nils Stein (Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany)
"Bioinformatics Challenges for Sequencing the Barley Genome"
09:45 - 10:15 Maria del Carmen Pérez Zarate (Universidad Autónoma de la Ciudad de México, Mexico)
"Space-time dynamics of Stem Cell Niches: a unified approach for Plants"
10:15 - 10:45 Coffee/Tea Break
Session 6
10:45 - 11:15 Dimitar Vassilev (AgroBioInstitute, Bulgaria)
"A Semi-Automated Approach for Anatomical Ontology Mapping"
11:15 - 11:45 Daniel Arend (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
"The !eDAL JAVA-API: Store, Share and Cite Primary Data in Life Sciences"
11:45 - 12:00 Closing Remarks
12:00 - 13:00 Lunch
13:15 Bus Shuttle to Quedlinburg

Post-Symposium Meeting
(All symposium participants are invited to attend)

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13:45 - 18:00 International German/Russian Workshop on Integrative Biological Pathway Analysis and Simulation (program outline)
18:15 Bus Shuttle to Quedlinburg